Table 5 Running time for different ncRNA families (seconds)
From: Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM
RNA Type | Knot-Structure | IP-knot | Turbo-Knot | Hx-match | RNA Type | Knot-Structure | IP-knot | Turbo-Knot | Hx-match |
|---|---|---|---|---|---|---|---|---|---|
HDV_ribozyme | 1.55 | 0.35 | 28.22 | 0.41 | Tymo_tRNA-like | 1.78 | 0.24 | 12.24 | 0.28 |
Alpha_RBS | 1.93 | 0.49 | 37.25 | 0.55 | Corona_FSE | 1.51 | 0.30 | 12.75 | 0.35 |
Tombus_3_IV | 1.80 | 0.37 | 13.66 | 0.42 | Prion_pknot | 1.07 | 0.10 | 4.23 | 0.12 |