A novel subgradient-based optimization algorithm for blockmodel functional module identification

BMC Bioinformatics

Table 3 Topological analysis of different KOG categories in Saccharomyces cerevisia PPI network

KOG ID	Method	proteins	sparse modules/modules	Avg. density	Avg. clustering coef.
U	SGPG	353	15/26	2.98%	0.0814
	MCL	256	0/21	27.38%	0.2402
K	SGPG	359	6/24	6.68%	0.1352
	MCL	361	0/19	26.35%0	0.1834
J	SGPG	579	9/24	9.16%	0.0678
	MCL	358	0/25	37.90%	0.1429
T	SGPG	169	13/21	3.47%	0.0755
	MCL	94	0/12	31.31%	0.0912

ISSN: 1471-2105