|
Function
|
# Test Proteins
|
Text-KNN (Textless)
|
Text-KNN (Cross-validation)
|
|---|
| | |
P
|
R
|
F
|
P
|
R
|
F
|
|---|
|
GO:0065007
|
19
|
0.28
|
0.47
|
0.35
|
0.23
|
0.52
|
0.31
|
|
GO:0032502
|
18
|
0.19
|
0.22
|
0.21
|
0.22
|
0.19
|
0.20
|
|
GO:0009987
|
8
|
0.04
|
0.13
|
0.06
|
0.24
|
0.29
|
0.26
|
|
GO:0050896
|
20
|
0.38
|
0.30
|
0.33
|
0.25
|
0.16
|
0.19
|
|
GO:0008152
|
7
|
0.29
|
0.29
|
0.29
|
0.23
|
0.14
|
0.17
|
|
GO:0051234
|
9
|
0.33
|
0.33
|
0.33
|
0.32
|
0.20
|
0.25
|
|
GO:0016043
|
6
|
0.00
|
0.00
|
0.00
|
0.13
|
0.05
|
0.07
|
|
GO:0023052
|
3
|
0.00
|
0.00
|
0.00
|
0.18
|
0.11
|
0.14
|
|
GO:0032501
|
9
|
0.00
|
0.00
|
0.00
|
0.12
|
0.02
|
0.04
|
|
GO:0022414
|
7
|
0.00
|
0.00
|
0.00
|
0.51
|
0.15
|
0.24
|
|
GO:0051704
|
1
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
|
GO:0040011
|
3
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
|
GO:0002376
|
1
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
0.00
|
- Prediction performance of Text-KNN on proteins that have no associated text is shown in the Text-KNN (Textless) column. As a point of reference, the average cross-validation results, denoted as Text-KNN (Cross-Validation) as obtained over the whole cross-validation dataset, are shown for comparison only. The columns P, R, and F refer, respectively, to the Precision, Recall, and F-measure of the classifier over individual GO categories. A precision and recall values of 0 on a class indicates that all the proteins belonging to that class are misclassified into another class.
