Table 2 Performance of CLASS with alternate exon data.
From: CLASS: constrained transcript assembly of RNA-seq reads
Set | Transcripts | Match_ref | Match_pred | Recall | Precision |
|---|---|---|---|---|---|
Paired-end reads | |||||
CLASS_IsoCEM | 541 | 279 | 293 | 0.499 | 0.542 |
CLASS_Cufflinks | 744 | 343 | 389 | 0.614 | 0.523 |
CLASS_Scripture | 622 | 297 | 325 | 0.531 | 0.523 |
Single-end reads | |||||
CLASS_IsoCEM | 614 | 286 | 311 | 0.512 | 0.507 |
CLASS_Cufflinks | 666 | 366 | 436 | 0.655 | 0.655 |
CLASS_Scripture | 568 | 303 | 361 | 0.542 | 0.636 |