BMC Bioinformatics

Table 3 Performance of four programs on the adrenal data set

From: CLASS: constrained transcript assembly of RNA-seq reads

	All				Multi-exon only
Set	Transcripts	Recall	Precision	F-value	Transcripts	Recall	Precision	F-value
ENSEMBL	3280	-	-	-	3280	-	-	-
IsoCEM	21339	0.696	0.137	0.229	1951	0.535	0.765	0.630
Cufflinks	13073	0.798	0.318	0.455	3316	0.637	0.729	0.680
Scripture	11553	0.638	0.472	0.543	7573	0.539	0.561	0.550
CLASS	7394	0.745	0.800	0.772	5117	0.704	0.795	0.747
CLASS0	7062	0.744	0.786	0.764	4785	0.703	0.775	0.737

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ISSN: 1471-2105

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