Skip to main content

Table 1 Performance of the three tools

From: A novel min-cost flow method for estimating transcript expression with RNA-Seq

 

Precision

Recall

F-measure

Avg. run time/gene

 

(0.1, 0.2)

(0.9, 0.2)

(0.1, 0.2)

(0.9, 0.2)

(0.1, 0.2)

(0.9, 0.2)

 

IsoLasso

0.0183

0.2126

0.0258

0.3109

0.0214

0.2132

25 s

Cufflinks

0.0545

0.3623

0.0482

0.2931

0.0507

0.3060

40 s

Traph

0.0862

0.3729

0.0689

0.3988

0.0747

0.3665

72 s

  1. Performance of the three tools under scrutiny in the single genes scenario; precision, recall and F-measure are computed for (relative expression level difference, bitscore) ∈ {(0.1,0.2),(0.9,0.2)}
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us