Figure 1
From: Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing
Saturation plots of weights on gene set category c5. Shown are the numbers of unique gene sets detected by different number of weights indicated in x-axis. (a) is for the artificial data sets; (b) cancer; (c) BA46; (d) BA22. From the fewest to the most number of weights, we gradually included the following weights in the order of (1 - DE-only, 0 - DS-only, 0.5, 0.1, 0.9, 0.3, 0.7, 0.2, 0.4, 0.6, 0.8, 0.05, 0.15, 0.25, 0.35, 0.45, 0.55, 0.65, 0.75, 0.85, 0.95). Red color indicates "Linear" combination, blue "RankSp", and black "RankGlb".