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Table 1 Coverage statistics for two quartets used in validation experiments.

From: Joint genotype inference with germline and somatic mutations

Exome sequencing (AB SOLiD system)
  Total Normal Tumor Father Mother
Quartet A (chromosome 12 only)    
Sites: 11 458 426     
Reads: 5 530 702 1 454 529 1 396 361 1 117 647 1 562 165
Depth: 23.0 6.0 5.8 4.6 6.6
Experimental tumor purity:   0.63   
QUAD GT's purity estimate:   0.41   
Quartet B (all chromosomes)    
Sites: 425 344 130     
Reads: 134 574 732 38 156 404 34 580 382 29 997 426 31 840 520
Depth: 23.0 5.4 5.1 6.5 5.9
Experimental tumor purity:   0.97   
QUAD GT's purity estimate:   0.44   
Whole-genome sequencing (Illumina HiSeq 2000)   
Quartet B (whole genome)   
  Total Normal Tumor   
Depth: 123.8 48.6 75.2   
Illumina's purity estimate: 0.46