Skip to main content

Table 4 Simulated dataset 2 results (75 bp reads)

From: Bellerophon: a hybrid method for detecting interchromo-somal rearrangements at base pair resolution using next-generation sequencing data

  40X 30X 20X 10X 4X
Method SE SP ABE SE SP ABE SE SP ABE SE SP ABE SE SP ABE
B-phon 9/9 9/9 3.5 9/9 9/9 3.4 8/9 8/8 1.6 9/9 9/9 0.6 4/9 4/4 0.5
SVD 8/9 8/9 87-451 8/9 8/9 72-436 8/9 8/9 84-422 8/9 8/9 86-416 6/9 6/6 88-344
BD 9/9 14/14 169.7 9/9 14/14 170.8 9/9 13/13 155.5 7/9 10/10 129.7 1/9 1/1 199.2
GASV 9/9 9/9 73-177 9/9 9/9 75-189 9/9 9/9 75-201 8/9 8/8 81-212 7/9 7/7 101-285
CREST 9/9 15/15 1.2 9/9 14/14 1.1 8/9 8/8 0.8 7/9 7/7 1.1 1/9 1/1 1.5