Table 4 Assembly reconciliation tools performances on Staphylococcus aureus.
From: GAM-NGS: genomic assemblies merger for next generation sequencing
Tool | User (CPU) time | Wall clock time |
|---|---|---|
Allpaths-LG + MSR-CA | ||
GAM-NGS | 1h 10' 19" + 51" | 4' 10" + 17" |
GAA | 1' 20" | 1' 20" |
ZORRO | 3' 04" | 3' 04" |
MSR-CA + Allpaths-LG | ||
GAM-NGS | 1h 10' 19" + 49" | 4' 10" + 17" |
GAA | 1' 11" | 1' 11" |
ZORRO | 14' 18" | 14' 18" |
Allpaths-LG + SOAPdenovo | ||
GAM-NGS | 1h 10' 53" + 33" | 5' 12" + 24" |
GAA | 5' 04" | 5' 04" |
ZORRO | 7' 08" | 7' 08" |
SOAPdenovo + Allpaths-LG | ||
GAM-NGS | 1h 10' 53" + 34" | 5' 12" + 25" |
GAA | 4' 49" | 4' 49" |
ZORRO | 9' 52" | 9' 52" |