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Table 4 Assembly reconciliation tools performances on Staphylococcus aureus.

From: GAM-NGS: genomic assemblies merger for next generation sequencing

Tool User (CPU) time Wall clock time
Allpaths-LG + MSR-CA
GAM-NGS 1h 10' 19" + 51" 4' 10" + 17"
GAA 1' 20" 1' 20"
ZORRO 3' 04" 3' 04"
MSR-CA + Allpaths-LG
GAM-NGS 1h 10' 19" + 49" 4' 10" + 17"
GAA 1' 11" 1' 11"
ZORRO 14' 18" 14' 18"
Allpaths-LG + SOAPdenovo
GAM-NGS 1h 10' 53" + 33" 5' 12" + 24"
GAA 5' 04" 5' 04"
ZORRO 7' 08" 7' 08"
SOAPdenovo + Allpaths-LG
GAM-NGS 1h 10' 53" + 34" 5' 12" + 25"
GAA 4' 49" 4' 49"
ZORRO 9' 52" 9' 52"
  1. In GAM-NGS's entries the first value indicates the time spent in alignment phase, while the second one is GAM-NGS's run time.
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