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Table 1 Validation measures for SOM training: standard (sSOM) versus biological (bSOM) for metabolic datasets

From: Improving clustering with metabolic pathway data

 

sSOM

 

bSOM

 

α

0.00

0.25

0.50

0.75

Solanum lycopersicum

C ¯

0.65

0.69

0.73

0.79

S ¯

0.66

0.65

0.59

0.49

D B

9.56

31.00

13.90

19.05

D

0.59

0.40

0.40

0.37

P ¯

3.58

2.74

2.58

2.08

G

0.87

0.90

0.83

0.87

Arabidopsis thaliana

C ¯

0.48

0.55

0.64

0.65

S ¯

0.81

0.79

0.79

0.71

D B

10.45

8.86

490

60.66

D

0.32

0.24

0.50

0.54

P ¯

3.84

2.93

2.17

1.56

G

0.65

0.67

0.52

0.48