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Table 5 Overlap rate of true CNV segments and detected CNV segments in simulation study 3, comparing between m-HMM with and without change point adjustment

From: Copy number variation detection using next generation sequencing read counts

Overlap rate

CNV segment length

1 kb

5 kb

10 kb

m-HMM without adj.

0.724

0.912

0.902

m-HMM

0.859

0.971

0.927

  1. The overlap rate is evaluated using the overlap length divided by the true CNV segment length.
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BMC Bioinformatics

ISSN: 1471-2105

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