Identifying pathogenic processes by integrating microarray data with prior knowledge

BMC Bioinformatics

Table 1 Summarizing the inferred heart failure clusters

Cluster	Size	Upreg. (%)	Edges	Priors (%)	Top three GO terms
1	315	89.3	98910	0.4	Extracellular region, basement membrane, proteinaceous extracellular matrix
2	85	28.4	7140	0.1	Positive regulation of cell cycle, polysaccharide metabolic process, carbohydrate
					biosynthetic process

Size = number of genes in each cluster, Upreg. (%) = percentage of upregulated genes, Edges = number of edges, Priors (%) = percentage of edges that were prior pairs, and Top three GO terms = the three most significant Gene Ontology terms found by GOstats [33].

ISSN: 1471-2105