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Table 3 Performance of Oli , OliMo , OliMoSS , RNAcontext and both RPISeq methods on PUM2+ in combination with two different negative datasets

From: Protein-specific prediction of mRNA binding using RNA sequences, binding motifs and predicted secondary structures

Pos. data Neg.data Value Oli OliMo OliMoSS RNAcontext RPISeq-SVM RPISeq-RF
PUM2+ PUM2- AUC 0.77 0.77 0.74 0.75 0.73 0.52
   Prec 0.73 0.73 0.69 0.59 0.48 0.42
PUM2+ 3K- AUC 0.84 0.84 0.82 0.83 0.77 0.56
   Prec 0.80 0.80 0.74 0.68 0.47 0.40
  1. The table shows the performance for each method on two different datasets: one with PUM2+ and experimental negatives PUM2- and one with PUM2+ and randomly selected 3’-UTRs 3K-. AUC and precision (Prec) values were calculated for a 10-fold cross validation.