Table 1 Sizes of gene set collections built from the NCBI gene2go table 1
From: GO2MSIG, an automated GO based multi-species gene set generator for gene set enrichment analysis
| Â | Â | Â | Number of gene sets in collection (average number of genes in set) | |
|---|---|---|---|---|
Taxon ID | Organism | Number of genes with GO annotation | All evidence codes | High quality evidence codes |
234826 | Anaplasma marginale str. St. Maries | 196 | 48 (40) | Â |
212042 | Anaplasma phagocytophilum str. HZ | 1288 | 218 (55) | 221 (60) |
3702 | Arabidopsis thaliana | 27942 | 2032 (129) | 1951 (85) |
227321 | Aspergillus nidulans FGSC A4 | 7326 | 1152 (69) | 35 (31) |
198094 | Bacillus anthracis str. Ames | 5097 | 465 (81) | 466 (81) |
9913 | Bos taurus | 5567 | 2634 (67) | 1285 (58) |
6239 | Caenorhabditis elegans | 12642 | 1505 (84) | 1098 (81) |
195099 | Campylobacter jejuni RM1221 | 1826 | 315 (62) | 316 (63) |
246194 | Carboxydothermus hydrogenoformans Z-2901 | 2609 | 363 (64) | 362 (65) |
227377 | Coxiella burnetii RSA 493 | 1798 | 271 (67) | 272 (67) |
214684 | Cryptococcus neoformans var. neoformans JEC21 | 3427 | 969 (68) | Â |
7955 | Danio rerio | 16957 | 2201 (83) | 1342 (68) |
243164 | Dehalococcoides ethenogenes 195 | 1583 | 265 (72) | 265 (71) |
352472 | Dictyostelium discoideum AX4 | 7694 | 1184 (86) | 801 (72) |
7227 | Drosophila melanogaster | 12560 | 2750 (83) | 2459 (78) |
205920 | Ehrlichia chaffeensis str. Arkansas | 1090 | 221 (56) | 223 (59) |
511145 | Escherichia coli str. K-12 substr. MG1655 | 2518 | 198 (112) | Â |
9031 | Gallus gallus | 2104 | 1460 (64) | 643 (52) |
243231 | Geobacter sulfurreducens PCA | 3269 | 347 (82) | 348 (82) |
9606 | Homo sapiens | 18106 | 5808 (82) | 4403 (81) |
265669 | Listeria monocytogenes serotype 4b str. F2365 | 2811 | 384 (79) | 385 (79) |
243233 | Methylococcus capsulatus str. Bath | 2902 | 377 (72) | 378 (72) |
10090 | Mus musculus | 24667 | 5615 (79) | 3643 (74) |
222891 | Neorickettsia sennetsu str. Miyayama | 928 | 204 (54) | 206 (56) |
39947 | Oryza sativa Japonica Group | 4266 | 30 (18) | 2 (14) |
36329 | Plasmodium falciparum 3D7 | 1770 | 212 (65) | 219 (67) |
223283 | Pseudomonas syringae pv. tomato str. DC3000 | 3950 | 436 (73) | 439 (77) |
10116 | Rattus norvegicus | 18599 | 5746 (79) | 3081 (75) |
246200 | Ruegeria pomeroyi DSS-3 | 4250 | 497 (85) | 496 (86) |
559292 | Saccharomyces cerevisiae S288c | 6244 | 2005 (75) | 1849 (74) |
284812 | Schizosaccharomyces pombe 972Â h- | 5276 | 1627 (82) | 1118 (67) |
211586 | Shewanella oneidensis MR-1 | 4272 | 418 (79) | 419 (79) |
999953 | Trypanosoma brucei brucei strain 927/4 GUTat10.1 | 1073 | 157 (74) | 147 (80) |
9606 | Homo sapiens (MSigDB collection) | 18106 | Â | 1422 (69)2 |
9606 | Homo sapiens (From Affymetrix annotation file) | 18106 | 5383 (80) | Â |