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Table 2 Comparison of bootstrap 95% percentile confidence interval of average F-measure of different versions of HFold when given SimFold structure as input vs. when given HotKnots hotspots structures as input

From: A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures

Input Hotspots SimFold (MFE)
  PKonly HFold Iter. HFold PKonly HFold Iter. HFold
HK-PK (55.54, 71.06) (73.35, 83.53) (72.83, 83.37) (50.57, 63.53) (50.69, 63.54) (51.42, 64.39)
HK-PK-free (31.37, 38.52) (75.53, 80.79) (74.93, 80.26) (78.42, 83.21) (78.33, 83.27) (78.31, 83.17)