Table 6 Results for predicted Sub. Loc. with proxy
From: Joint probabilistic-logical refinement of multiple protein feature predictors
Disulfide bonding state | ||||
|---|---|---|---|---|
Experiment | Q | P | R | F 1 |
Raw predictions | 0.804 ± 0.03 | 0.720 ± 0.06 | 0.917 ± 0.04 | 0.811 ± 0.04 |
Dis. + Met. | 0.838 ± 0.03 | 0.776 ± 0.04 | 0.912 ± 0.04 | 0.838 ± 0.04 |
Dis. + Loc. | 0.803 ± 0.03 | 0.727 ± 0.05 | 0.922 ± 0.04 | 0.811 ± 0.04 |
Dis. + Met. + Loc. | 0.846 ± 0.03 | 0.784 ± 0.04 | 0.918 ± 0.04 | 0.845 ± 0.04 |
HMSVM | 0.882 ± 0.03 | 0.890 ± 0.05 | 0.856 ± 0.04 | 0.872 ± 0.04 |
BRNN | 0.884 ± 0.03 | 0.895 ± 0.03 | 0.847 ± 0.05 | 0.870 ± 0.03 |
Metal bonding state | ||||
Experiment | Q | P | R | F 1 |
Raw predictions | 0.952 ± 0.02 | 0.686 ± 0.09 | 0.827 ± 0.10 | 0.747 ± 0.09 |
Dis. + Met. | 0.952 ± 0.02 | 0.696 ± 0.08 | 0.795 ± 0.11 | 0.739 ± 0.08 |
Dis. + Loc. | – | – | – | – |
Dis. + Met. + Loc. | 0.952 ± 0.02 | 0.706 ± 0.08 | 0.782 ± 0.10 | 0.735 ± 0.06 |
HMSVM | 0.952 ± 0.02 | 0.755 ± 0.07 | 0.707 ± 0.09 | 0.725 ± 0.06 |
BRNN | 0.950 ± 0.02 | 0.694 ± 0.09 | 0.768 ± 0.11 | 0.723 ± 0.08 |
Subcellular localization | ||||
Raw predictions | ||||
| Â | Cytosol | ExtraCell. | Mitoch. | Nucleus |
Cytosol | 14 | 11 | 2 | 5 |
ExtraCell. | 17 | 206 | 2 | 29 |
Mitoch. | 12 | 8 | 6 | 8 |
Nucleus | 46 | 67 | 15 | 78 |
Dis. + Loc. | ||||
Cytosol | 13 | 13 | 2 | 4 |
ExtraCell. | 22 | 224 | 0 | 8 |
Mitoch. | 12 | 6 | 8 | 8 |
Nucleus | 61 | 56 | 14 | 75 |
Dis. + Met. + Loc. | ||||
Cytosol | 14 | 12 | 2 | 4 |
ExtraCell. | 22 | 224 | 0 | 8 |
Mitoch. | 12 | 6 | 8 | 8 |
Nucleus | 67 | 41 | 17 | 81 |