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Figure 5 | BMC Bioinformatics

Figure 5

From: On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Figure 5

Segmentation by DSSP and by quality score for an example alignment. We show the seed alignment of PF05134.8 (T2SL, type II secretion system protein L). Below the alignment, two segmentations are presented. Red and green segment in the upper line are assigned labels “H, B, E, G, I, T, S” the DSSP [40] file for the structure 1 W97 (chain L) and together represent the respective fold-relevant part. In the lower line, the segmentation is based on alignment quality giving rise to black (fold-relevant) and grey (remnant) segments.

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BMC Bioinformatics

ISSN: 1471-2105

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