Table 1 Performance over 50 down-sampling experiments at 10X, and 20X coverage
From: PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
Coverage | 10x | 20x | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Params | "c5 e5" | "c7 e5" | "c5 e7" | "c3 e5" | "c5 e3" | "c5 e5" | "c7 e5" | "c5 e7" | "c3 e5" | "c5 e3" |
TP | 210 | 182 | 187 | 217 | 210 | 234 | 239 | 228 | 237 | 236 |
FP | 25 | 0 | 7 | 55 | 302 | 1 | 0 | 1 | 3 | 46 |
FN | 40 | 68 | 63 | 40 | 38 | 16 | 11 | 22 | 13 | 14 |
Sensitivity | 84.00% | 72.80% | 74.80% | 86.80% | 84.00% | 93.60% | 95.60% | 91.20% | 94.80% | 94.40% |
PPV | 89.36% | 100.00% | 96.39% | 79.78% | 41.02% | 99.57% | 100.00% | 99.56% | 98.75% | 83.69% |