From: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Adapter trimming | Quality control | Other | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Method | 5’ | 3’ | SE | PE | LMP | Multi | Ns | Q | Barcode | Merge | gzip Files | MT |
FastX | × | ○ | ○ | × | × | × | ○ | × | ○ | × | × | × |
SeqTrim | × | ○ | ○ | × | × | ○ | ○ | ○ | × | × | ○ | ○ |
TagCleaner | ○ | ○ | ○ | × | × | × | × | × | × | × | × | × |
EA-Tools | × | ○ | ○ | ○ | × | × | ○ | ○ | ○ | × | ○ | × |
Cutadapt | ○ | ○ | ○ | ○ | × | ○ | × | ○ | × | × | ○ | × |
TrimGalore | × | ○ | ○ | ○ | × | × | × | ○ | × | × | ○ | × |
SeqPrep | × | ○ | × | ○ | × | × | × | × | × | ○ | × | × |
Btrim | ○ | ○ | ○ | ○ | × | × | × | ○ | ○ | × | × | × |
Scythe | × | ○ | ○ | × | × | × | × | × | × | × | ○ | × |
Flexbar | ○ | ○ | ○ | ○ | × | ○ | ○ | ○ | ○ | × | ○ | ○ |
Trimmomatic | × | ○ | ○ | ○ | × | ○ | × | ○ | × | × | ○ | ○ |
AdapterRemoval | ○ | ○ | ○ | ○ | × | × | ○ | ○ | × | ○ | × | × |
AlienTrimmer | ○ | ○ | ○ | ○ | × | ○ | × | ○ | × | × | × | × |
NextClip | × | × | × | × | ○ | × | × | × | × | × | × | × |
Skewer | ○ | ○ | ○ | ○ | ○ | ○ | ○ | ○ | ○ | × | ○ | ○ |