Subtype | Nucleotide | Frequency | Probability |
---|
 | A | 89 | 99.83% |
A | C | 0 | 0.06% |
 | G | 0 | 0.06% |
 | T | 0 | 0.06% |
 | A | 392 | 99.71% |
C | C | 1 | 0.27% |
 | G | 0 | 0.01% |
 | T | 0 | 0.01% |
 | A | 2 | 93.18% |
K | C | 0 | 2.27% |
 | G | 0 | 2.27% |
 | T | 0 | 2.27% |
- Nucleotide frequencies and the derived emission probabilities for one column in an alignment of HIV-1 Group M sequences without using an information sharing protocol. The emission probabilities are estimated from the nucleotide frequencies using the pseudocounts . We here restrict ourselves to 3 subtypes, A, C, and K.