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Table 2 Correlation ( r ) between nine gene compositional features and gene body-methylation

From: Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa

Variable

Short name

R

GC3

GC3

−0.673

Gene expression: mean (μ)

GE_MEAN

0.255

        Standard deviation (σ)

GE_STDEV

0.084

        CV of expression ( σ μ )

GE_CV

−0.217

Genome signature (ρ= f CG f C f G )

GEN_SIG

−0.697

CDS length

l

0.286

Change in CG3 from the left to the middle of the gene

GRADLM

0.269

Change in CG3 from the middle to the of the right gene

GRADMR

−0.289

CG3 in the left third of the coding sequence (CDS)

GCL

−0.364

CG3 in the middle third of CDS

GCM

−0.545

CG3 in the right third of CDS

GCR

−0.343