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Table 1 Number of motifs identified by MoTeX-II using a synthetic dataset

From: MoTeX-II: structured MoTif eXtraction from large-scale datasets

Parameters

Implanted

Identified

Extracted

 

motifs

implanted motifs

motifs

<(8,1)[3,3](8,1),7>

100

100

100

<(8,1)[3,3](8,1),15>

100

100

105

<(8,1)[3,3](9,2),7>

100

100

100

<(8,1)[3,3](9,2),15>

100

100

100

<(9,2)[3,3](8,1),7>

100

100

128

<(9,2)[3,3](8,1),15>

100

100

120

<(9,2)[3,3](9,2),7>

100

100

101

<(9,2)[3,3](9,2),15>

100

100

100

  1. The number of motifs identified by MoTeX-II using a synthetic dataset. The basic input dataset consists of 1,062 upstream sequences of Bacillus subtilis genes of total size 240 KB.
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BMC Bioinformatics

ISSN: 1471-2105

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