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Table 1 Fitness functions for measuring simulation error

From: A continuous optimization approach for inferring parameters in mathematical models of regulatory networks

Criterion

Notation

Definition

Comment

DAE1

D J 1 A

Eq. (2)

Discrete absolute error of function values

DAE2

D J 1 A +D J 2 A

(2, 4)

Discrete absolute error of function and derivative values

DAE3

D J 1 A +D J 2 A +D J 3 A

(2, 4, 6)

Discrete absolute error of function, derivative, second derivative values

DAE4

D J 1 A +D J 2 A +D J 4 A

(2, 4, 8)

Discrete absolute error of function, derivative values as well as values of second derivative.

DRE1

D J 1 R

(3)

Discrete relative error of function values

DRE2

D J 1 R +D J 2 R

(3, 5)

Discrete relative error of function and derivative values

DRE3

D J 1 R +D J 2 R +D J 3 R

(3, 5, 7)

Discrete relative error of function, derivative, second derivative values

DRE4

D J 1 R +D J 2 R +D J 4 R

(3, 5, 9)

Discrete relative error of function, derivative values as well as values of second derivative.

CAE1

C J 1 A

(10)

Continuous absolute error of function values

CAE2

C J 1 A +C J 2 A

(10, 12)

Continuous absolute error of function and derivative values

CAE3

C J 1 A +C J 2 A +C J 3 A

(10, 12, 14)

Continuous absolute error of function, derivative, second derivative values

CAE4

D J 1 R +D J 2 R +D J 4 R

(10, 12, 16)

Continuous absolute error of function, derivative values as well as values of second derivative.

CRE1

C J 1 R

(11)

Continuous relative error of function values

CRE2

C J 1 R +C J 2 R

(11, 13)

Continuous relative error of function and derivative values

CRE3

C J 1 R +C J 2 R +C J 3 R

(11, 13, 15)

Continuous relative error of function, derivative, second derivative values

CRE4

C J 1 R +C J 2 R +C J 4 R

(11, 13, 17)

Continuous relative error of function, derivative values as well as values of second derivative.

  1. (DAE: discrete absoulte error, CAE: continuous absolute error, DRE: discrete relative error, CRE: continuous relative error).