Skip to main content

Table 2 Run time comparisons of Clinical PathoScope and existing technologies

From: Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

   Average Run Time (minutes)
Dataset Target Clinical PathoScope RINS READSCAN
Simulation Virus 4.5 84.1 193.58
Simulation Bacteria 13.1 1108.2
PCCL Virus 6.0 89.1 52.8
TMAdv Virus 4.4 144.0 78.6
Mummy Bacteria 25.0 1099 882