Table 1 List of RDF databases integrated in SPARQLGraph
From: SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases
EBI RDF platform | ||||
|---|---|---|---|---|
Database | Triples | Focus | Example elements | Reference |
Atlas | 447.149.547 | Gene Expression | Experiment, Assay | [12] |
ChEMBL | 374.762.364 | Chemogenomics | Compound, Target | [13] |
Reactome | 12.487.422 | Pathways | Pathway, Reaction | [14] |
UniProt | 9.024.662.088 | Proteins | Protein | [15] |
Bio2RDF v2 | ||||
Database | Triples | Focus | Example Elements | Reference |
Entrez Gene | 394.026.267 | Genes | Gene | [16] |
DrugBank | 1.121.468 | Drugs | Drug, Target | [17] |
KEGG | 49.850.774 | Pathways | Pathway, Reaction | [18] |
PharmGKB | 142.782.063 | Pharmacogenomics | Drug, Disease | [19] |