Table 12 Runtime for scaffolders on Rhodobacter sphaeroides with wide mate pair library
From: BESST - Efficient scaffolding of large fragmented assemblies
Runtime (hh:mm:ss) | ||||
|---|---|---|---|---|
Assembly | BESST | OPERA | SOPRA | SSPACE |
ABySS | 00:00:52 | 00:04:33 | 00:14:49 | 00:00:50 |
Allpaths-LG | 00:00:31 | 00:04:03 | 00:08:48 | 00:00:36 |
Bambus2 | 00:00:25 | 00:03:50 | 00:09:08 | 00:00:33 |
CABOG | 00:00:31 | 00:03:10 | 00:07:17 | 00:00:37 |
MSR-CA | 00:00:30 | 00:03:46 | 00:08:29 | 00:00:39 |
SGA | 00:00:36 | 00:04:06 | 00:16:29 | 00:00:49 |
SOAPdenovo | 00:00:27 | 00:04:35 | 00:09:54 | 00:00:35 |
Velvet | 00:00:33 | 00:03:58 | 00:09:38 | 00:00:40 |