Table 1 Frequency of A-DNA promoter sequences in Xenopus tropicalis 4.2 genome (apelen ≥ 10, motifgap ≤ 20, motifs for combined promoter sequences: CCAAT, GGGCGG, AGATA and TGATA)
From: APTE: identification of indirect read-out A-DNA promoter elements in genomes
A-form promoter sequences (APS) | 54,703 |
Combined promoter sequences (CPS) | 9,909 |
Total number of genes in genome | 18,442 |
Genes with APS within 500Â bp upstream of TSSa | 586 (3.18% of genes) |
Genes with CPS within 500Â bp upstream of TSS | 86 (0.47% of genes) |