Table 2 Average (50 replicates) execution time (standard deviation) of simulating 1-Mb sequence data with a pre-specified number of recombination hotspots (mm:ss)*
From: Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences
Number of hotspots | N | ms | msHOT | MaCS | Simcoal2* | Fastsimcoal |
|---|---|---|---|---|---|---|
0 | 100 | 0:01 (2×10-3) | 0:02 (0:01) | 0:01 (0:00) | 1:51 (0:03) | <0:01 (4×10-4) |
500 | 0:01 (2×10-3) | 0:04 (0:01) | 0:06 (0:01) | 2:19 (0:04) | 0:03 (3×10-3) | |
1,000 | 0:02 (5×10-3) | 0:06 (0:01) | 0:23 (0:02) | 2:34 (0:08) | 0:08 (0:01) | |
10,000 | --- | --- | 5:42 (0:13) | 3:51 (0:07) | 2:18 (0:03) | |
2 | 100 | --- | 1:28 (0:02) | 0:03 (0:01) | 1:51 (0:06) | <0:01 (3×10-4) |
500 | --- | 1:43 (0:05) | 0:10 (0:01) | 2:45 (0:08) | 0:03 (0:01) | |
1,000 | --- | 1:51 (0:05) | 0:25 (0:03) | 2:50 (0:09) | 0:08 (0:01) | |
10,000 | --- | 2:39 (0:07) | 5:43 (0:10) | 4:27 (0:11) | 2:22 (0:03) | |
5 | 100 | --- | 2:48 (0:05) | 0:02 (0:01) | 2:30 (0:06) | <0:01 (9×10-4) |
500 | --- | 3:14 (0:07) | 0:10 (0:02) | 2:41 (0:05) | 0:03 (5×10-3) | |
1,000 | --- | 3:33 (0:06) | 0:23 (0:02) | 3:24 (0:07) | 0:09 (0:02) | |
10,000 | --- | 4:27 (0:11) | 5:36 (0:15) | 4:10 (0:09) | 2:32 (0:05) |