SAGE: String-overlap Assembly of GEnomes

BMC Bioinformatics

Table 3 The datasets used for evaluation

Dataset	Organism	Accession	Reference	Genome	Read	Number	Number of	Coverage
		number	genome	length	length	of reads	base pairs
1	Bacillus subtilis	DRR000852	NC_000964.3	4,215,606	75	3,519,504	263,962,800	62.62
2	Chlamydia trachomatis	ERR021957	NC_000117.1	1,042,519	37	7,825,944	289,559,928	277.75
3	Streptococcus pseudopneumoniae	SRR387784	NC_015875.1	2,190,731	100	4,407,248	440,724,800	201.18
4	Francisella tularensis	SRR063416	NC_006570.2	1,892,775	101	6,907,220	697,629,220	368.57
5	Leptospira interrogans	SRR397962	NC_005823.1	4,277,185	100	7,127,250	712,725,000	166.63
6	Porphyromonas gingivalis	SRR413299	NC_002950.2	2,343,476	100	9,497,946	949,794,600	405.29
7	Escherichia coli	SRR072099	NC_000913.2	4,639,675	36	30,355,432	1,092,795,552	235.53
8	Clostridium thermocellum	SRR400550	NC_009012.1	3,843,301	36	31,994,160	1,151,789,760	299.69
9	Caenorhabditis elegans	SRR065390	WS222	100,286,070	100	67,617,092	6,761,709,200	67.42

The datasets are sorted increasingly by the total number of base pairs. All datasets and reference genome sequences are obtained from the NCBI, except C.elegans that is from http://www.wormbase.org

ISSN: 1471-2105