Performance | PLEK | CNCI | CPC | PhyloCSF |
---|
Run timea (seconds) | 128 | 1048 | 31247 | 181925e |
Multi-threadingb | Yes | Yes | Nod | No |
Online runningc | No | No | Yes | No |
- Computational time was tested on 1,000 human mRNA transcripts and 1,000 human lncRNA transcripts.
- aComputation time consumed when run in a single-threading manner.
- bCan the software tool run in a multi-threading manner?
- cDoes the software tool provide a website for users to run online?
- dCPC improves its computational performance using a page-cache method on its website.
- eBed files were load onto the Galaxy webserver (http://galaxy.nbic.nl/) and the tool ‘Stitch Gene Blocks’ was used to retrieve multiple alignment files with sequence entries for the following genome builds based on the 10-way Multiz alignment to hg19: hg19, panTro2, tarSyr1, micMur1, otoGar1 and rheMac2. PhyloCSF was run using the options: --removeRefGaps.