From: An improved alignment-free model for dna sequence similarity metric
Original | Partial sum | Entropy | Local frequency | LF based partial sum | LF based entropy |
---|---|---|---|---|---|
sequenceX | sequenceS, | value h | sequenceLF, | sequenceS LF , | valueh LF , |
S←X | h←S | LF←X | S LF ←LF | h LF ←S LF | |
10000000 | 11111111 | 3 | 10000000 | 11111111 | 3 |
00000001 | 00000001 | 0 |
|
| 0 |
10000001 | 11111112 | 2.9477 |
|
| 2.9985 |
10000010 | 11111122 | 2.9219 |
|
| 2.9966 |
10000100 | 11111222 | 2.6186 |
|
| 2.9942 |
10001000 | 11112222 | 2.5546 |
|
| 2.9911 |
10010000 | 11122222 | 2.5388 |
|
| 2.9868 |
10100000 | 11222222 | 2.6154 |
|
| 2.9808 |
11000000 | 12222222 | 2.9736 | 11000000 | 12222222 | 2.9736 |