BMC Bioinformatics

Table 3 The best clustering results in F-measure of CPF and alignment based models on different datasets

From: An improved alignment-free model for dna sequence similarity metric

	UCLUST		CD-HIT		CPF
Dataset	F-measure	Number of	F-measure	Number of	F-measure	Number of
		cluster		cluster		cluster
DS2	0.0623	197	0.2429	44	0.9755	6
DS3	0.0414	285	0.0620	189	0.9809	6
DS4	0.0633	183	0.1241	127	0.9761	6
HOG20	0.2590	197	0.2287	246	0.7791	20
HOG50	0.2197	484	0.1652	625	0.5576	50
HOG80	0.1871	897	0.1648	1033	0.5024	80
HOG100	0.1804	1185	0.1533	1433	0.4780	100
Settings	0.75≤T≤1		0.8≤T≤1		k=2

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ISSN: 1471-2105

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