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Table 3 Most enriched GO terms in the clusters C1 and C2 at various levels of tightness

From: Comprehensive analysis of forty yeast microarray datasets reveals a novel subset of genes (APha-RiB) consistently negatively associated with ribosome biogenesis

 

GO process

Back. frequency

δ = 0.1

 

δ = 0.2

 

δ = 0.3

 

δ = 0.4

 

δ = 0.5

 
   

Freq.

P-val.

Freq.

P-val.

Freq.

P-val.

Freq.

P-val.

Freq.

P-val.

C1

Ribosome biogenesis

411/7167

210/516

E-140

183/344

E-146

153/257

E-129

124/164

E-123

65/79

E-66

 

Biological process unknown*

1189/6334

46/516

 

26/344

 

17/257

 

9/164

 

4/79

 

C2

Response to oxidative stress

101/7167

23/394

E-6

6/47

E-3

      
 

Oxidation-reduction process

174/7167

33/394

E-7

3/47

>E-1

      
 

Biological process unknown*

1189/6334

114/394

 

12/47

       
  1. *The enrichment of the “biological process unknown” term has been found by the GO Slim Mapper tool rather than the GO Term Finder tool. Note that the p-value is only provided by the GO Term Finder tool.