Table 10 Some functional modules predicted by HAM-FMD using DIP data

1

5

yor132w yjl154c yhr012w yjl053w yor069w

Retromer module

3.13e-09

5.58e-13

4.67e-08

2

12

ybl084c ydl008w ydr118w yfr036w ygl240w ygr225w

Anaphase-promoting

4.62e-22

2.08e-28

4.13e-15

yhr166c ykl022c ylr102c ylr127c ynl172w yor249c

3

18

yal043c ydr195w ydr228c ydr301w yer032w ygl044c

RNA 3’ end processing factor

1.44e-33

2.76e-37

6.81e-13

ygr156w yjr093c ykl018w ykl059c ykr002w ylr115w

ylr277c ymr061w ynl317w yor179c yor250c ypr107c

4

11

q0080 q0130 ybl099w ybr039w ydl004w ydl181w

Mitochondrial proton-transporting

2.53e-13

2.53e-13

2.53e-13

ydr322c yjr121w yrl295c ynl315c ypl271w

ATP synthase

5

10

yar019c ybr127c ydl185w yel051w ygr020c ygr092w

No description

1.09e-16

3.49e-16

1.74e-15

ylr447c ymr054w yor270c yor332w

6

10

ycr057c ydr449c yer082c ygr090w yjl069c yjl109c

Small-subunit processome

4.59e-15

1.46e-18

1.40e-09

ylr129w ylr222c ylr409c ypl126w

7

9

ybr156c ydr016c ydr201w ygl061c ygr113w ykl052c

mutLbeta module

7.78e-17

7.78e-17

9.31e-15

ykr037c ykr083c ypl209c

8

8

ydr211w yer025w ygr083c yjr007w ykr026c ylr291c

Interacting eIF2 (Sui2/3/4

5.08e-14

9.27e-12

2.69e-15

yor260w ypl237w

and eIF2B (Gcd1/2/6/7/Gcn3)

9

7

yar003w ybr175w ybr258c ydr469w yhr119w ylr015w

Transcription factor

1.23e-14

1.53e-17

1.53e-17

ypl138c

10

7

q0085 ydr298c ydr377w ykl016c yml081c ypl078c

Mitochondrial proton-transporting

1.64e-12

4.58e-14

1.64e-12

ypl138c

ATP synthase