BMC Bioinformatics

Table 3 The results of various algorithms on different data sets

From: MAE-FMD: Multi-agent evolutionary method for functional module detection in protein-protein interaction networks

Data sets	Results	Algorithms
		MAE-FMD	CFinder	Coach	NACO-FMD	MCL	HAM-FMD	MCODE
	Number of clusters	193	98	325	162	208	163	69
Gavin	Size of average module	6.30	12.91	10.37	8.13	6.76	6.87	9.35
	N_cp>0.2	110	54	178	92	99	88	49
	N_cb>0.2	224	89	177	164	180	163	86
	Number of clusters	234	173	383	406	500	296	88
DIP	Size of average module	8.40	8.09	5.66	5.57	4.57	4.88	6.52
	N_cp>0.2	117	89	177	149	144	139	56
	N_cb>0.2	223	139	204	239	215	231	97
	Number of clusters	384	178	488	543	593	449	83
MIPS	Size of average module	5.84	9.29	9.23	4.93	6.16	3.92	6.23
	N_cp>0.2	115	55	146	119	92	110	30
	N_cb>0.2	197	86	151	173	138	157	55
	Number of clusters	526	204	891	571	968	598	55
DIPScere20140703	Size of average module	5.55	13.03	8.96	7.52	5.04	4.51	14.38
	N_cp>0.2	147	65	274	127	148	133	22
	N_cb>0.2	242	86	246	212	208	215	47
	Number of clusters	741	202	304	350	—	626	78
DIPHsapi20140703	Size of average module	4.39	5.76	4.57	4.85	—	3.89	5.17
	N_cp>0.2	136	43	60	45	—	112	9
	N_cb>0.2	136	41	53	47	—	112	9

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