Table 6 Some functional modules predicted by CFinder using DIP data

1

5

yor132w yjl154c yhr012w yjl053w yor069w

Retromer module

3.13e-09

5.58e-13

4.67e-08

2

21

ydl140c ydl108w yor151c yil021w ydr138w yjl140w

DNA-directed RNA

6.88e-17

3.27e-24

8.45e-19

ybr154c ypr187w yor210w yml010w ygl070c ykl145w

polymerase II, holoenzyme

ydr404c ypl129w ybr279w yor123c yol005c ygl244w

yol145c ylr418c ylr384c

3

20

ydl140c yer165w ymr061w ygl044c ykr002w yer133w

mRNA cleavage factor

1.60e-28

7.90e-39

5.71e-13

ykl059c ykl018w ydr228c ydr195w ynl317w yjr093c

yal043c ypr107c ylr277c ydr301w yor179c yor250c

ylr115w yol123w

4

18

yjr121w q0085 q0080 ydl181w ypl078c ybl099w

Mitochondrial proton-transporting

3.88e-37

3.88e-37

3.88e-37

ydr298c ypl271w ykl016c ynl315c ybr039w q0130

ATP synthase

ydr322c-a yml081c-a ydr377w ydl004w ypr020w ylr295c

5

13

yjr050w yer013w yal032c ykl095w yll036c ybr188c

Spliceosomal network

2.08e-18

1.83e-22

1.83e-22

ygl120c ygr129w ymr213w ydr416w ypr101w ylr117c

ypl151c

6

11

yor361c ymr309c ynl244c ybr079c ypr041w ygr162w

eIF1/eIF3/eIF5 complex

3.22e-14

5.19e-14

1.34e-18

ygl049c ymr146c yil071c ydr429c ylr192c

7

9

ykl052c ykr037c ykr083c ybr156c ypl209c gl061c

Condensed nuclear

7.78e-17

1.88e-12

9.31e-15

ygr113w ydr201w ydr016c

chromosome kinetochore

8

8

yor260w ypl237w ygr083c ykr026c yjr007w yer025w

interacting eIF2 (Sui2/3/4) and

5.08e-14

9.27e-12

2.69e-15

ydr211w ylr291c

and eIF2B (Gcd1/2/6/7/Gcn3)

9

8

ykl018w ybr175w ybr258c yhr119w yar003w ylr015w

COMPASS

4.31e-17

6.70e-21

6.70e-21

ypl138c ydr469w

10

6

yel032w ybl023c ylr274w yil150c ybr202w ylr103c

pre-replicative complex

4.70e-11

4.70e-11

4.12e-10