Table 7 Some functional modules predicted by Coach using DIP data

1

5

yor132w yor069w yjl154c yhr012w yjl053w

Retromer module

3.13e-09

5.58e-13

4.67e-08

2

11

yor249c ygl240w ydl008w ydr118w ykl022c yfr036w

Anaphase-promoting

6.17e-23

1.38e-25

2.81e-16

yhr166c ybl084c ylr127c ynl172w ylr102c

3

16

ydr335w ygl092w ykl068w ymr047c ykr082w ydl116w

Nuclear pore

2.49e-19

5.02e-14

8.81e-13

ygl172w ylr335w ygr119c ymr308c ygr218w yer165w

ydr192c ylr347c yjr042w ynl189w

4

17

ydr448w ydr176w yol148c yhr041c yer022w ydr392w

Transcription factor

3.93e-13

3.16e-18

1.88e-06

ydr308c ypl181w yer148w yel009c ybr198c ybr081c

yhr099w ygr274c ymr236w ypl254w ygl112c

5

8

ydr469w yar003w ybr175w ylr015w ypl138c yhr119w

Chromatin remodeling module

4.10e-12

2.99e-13

2.24e-10

ybr258c ykl018w

6

8

ycr057c yjl069c ydr449c ylr222c ygr090w ylr409c

Ribonucleoprotein module

1.09e-11

1.51e-14

7.63e-08

yjl109c ylr129w

7

7

ypr110c ynr003c yor116c yor207c ynl113w ykl144c

RNA polymerase III

7.97e-15

2.39e-15

2.39e-15

ypr190c

8

8

ybl099w yjr121w ydr377w yml081c q0085 ykl016c

Mitochondrial proton-transporting

5.41e-15

5.41e-15

5.41e-15

ypl078c ydr298c

and ATP synthase

9

7

yor260w ykr026c yjr007w ydr211w ygr083c ylr291c

Interacting eIF2 (Sui2/3/4)

3.57e-12

2.57e-12

2.89e-13

ypl237w

and eIF2B (Gcd1/2/6/7/Gcn3)

10

9

ybl105c yjl002c yel002c yor103c yor085w ydl232w

Oligosaccharyl transferase

1.48e-13

1.30e-17

1.33e-11

ygl226c ygl022w ymr149w