Table 8 Some functional modules predicted by NACO-FMD using DIP data

1

5

yor132w yor069w yjl154c yhr012w yjl053w

Retromer module

3.13e-09

5.58e-13

4.67e-08

2

11

ykl022c yhr166c ybl084c yfr036w ynl172w ylr127c

Anaphase-promoting

6.17e-23

1.38e-25

2.81e-16

yor249c ylr102c ygl240w ydl008w ydr118w

3

24

yor098c ynl189w yhr129c ygr119c ygl172w yil063c

Nuclear pore

9.65e-27

4.29e-21

2.36e-19

ygl092w ydr002w ydr192c ypl174c ylr347c yer009w

ykl068w ylr335w ymr047c ymr294w ygl097w ydl116w

ykl057c ykr082w ydr488c yjr042w yar002w ypl125w

4

15

yer148w ydr448w ydr176w yel009c ybr198c ygr274c

Transcription factor TFIIIB

5.87e-14

4.65e-19

2.36e-10

ybr081c yol148c ydr167w ymr236w ydr392w ygl112c

ypl254w ypl181w ypl011c

5

9

ybl023c yil150c ylr103c ylr274w ygl201c yel032w

DNA replication preinitiation

1.86e-14

1.86e-14

9.40e-14

ybr202w ypr019w ymr216c

6

9

ynr003c ypr110c ynl113w ydr045c yor116c yor207c

RNA polymerase III

2.28e-19

4.69e-20

4.69e-20

ypr190c yhr143w-a ykl144c

7

12

yll036c ydr416w ybr188c yjr050w yir009w yal032c

Ribonucleo protein

5.96e-17

3.33e-23

3.33e-23

ymr213w ygr129w ylr117c ykl095w ypl213w ypr101w

8

14

ydr228c ypr107c yol123w ymr061w ygl044c yjr093c

mRNA cleavage factor

1.23e-30

1.23e-30

1.82e-12

ykr002w ydr301w ylr277c ynl317w ylr115w yor250c

yal043c ykl059c

9

7

yhr090c yhr099w yor244w yjl081c ypr023c yfl024c

Transcription factor

8.08e-09

8.08e-16

2.34e-10

ynl107w

10

6

ygl061c ydr201w ykr083c ydr016c ykr037c ykl052c

Kinetochore module

2.63e-15

2.63e-15

7.90e-14