Table 9 Some functional modules predicted by MCL using DIP data

1

5

yyor132w yor069w yjl154c yhr012w yjl053w

Retromer module

3.13e-09

5.58e-13

4.67e-08

2

12

ykl022c ynl172w yfr036w yhr166c ybl084c ylr127c

Anaphase-promoting

4.62e-22

2.08e-28

4.13e-15

yor249c ygl240w ylr102c ydl008w ydr118w ygr225w

3

8

yar003w ybr175w ydr469w ylr015w yhr119w ypl138c

COMPASS module

4.31e-17

4.31e-17

6.70e-21

ybr258c ykl018w

4

10

ymr309c ynl244c ypr041w yor361c ymr146c ydr429c

eIF1/eIF3/eIF5 module

7.12e-10

2.05e-14

1.51e-13

yil071c ybr079c ynl062c ylr192c

5

16

ydr195w ydr228c yor250c ymr061w ypr107c yjr093c

mRNA cleavage factor

6.79e-26

4.48e-33

1.92e-11

ykr002w ydr301w ylr115w yal043c ylr277c ynl317w

ykl059c yor179c ynl222w ydl094c

6

7

yjl194w yml065w ybr060c yll004w ypr162c ynl261w

DNA replication preinitiation

5.38e-14

4.19e-15

2.64e-12

yhr118c

7

13

yor076c ygr158c ydl111c ygr195w ydr280w yol021c

Exosome

2.62e-28

4.57e-30

4.36e-02

yhr069c ynl232w yol142w ycr035c ygr095c yor001w

yhr081w

8

10

ynr003c ypr190c ypr110c ynl113w yor116c ydr045c

RNA polymerase III

1.93e-15

4.50e-16

4.50e-16

yor207c yfr011c ynl248c ykl144c

9

8

ybl023c ylr103c ylr274w yil150c yel032w ybr202w

DNA replication preinitiation

2.93e-12

2.93e-12

3.92e-11

ymr216c ygl201c

10

6

ylr418c ybr279w yol145c yor123c ygl244w yml010w

Transcription elongation factor

7.43e-15

4.11e-11

2.63e-12