Detection of internal exon deletion with exon Del

BMC Bioinformatics

Table 2 Exon deletion candidates identified by window length, and comparison with other CNV tools using the 10 TCGA breast cancer tumor samples

Deletion window length	1	2	3	4	5	6	7	8	9
Exon deletions	13494	1734	524	230	94	38	20	13	7
Verified in RNAseq	4722	489	174	70	36	16	10	7	4
Found by CNV tools	2635	584	268	154	73	33	17	12	6

ISSN: 1471-2105