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Table 3 Results of mapping 1 million single end reads of length 100bp against C. elegans and D. melanogaster

From: Improving read mapping using additional prefix grams

 

C. elegans

 

D. melanogaster

 

Read

# mappings

Time (min:sec)

Peak

 

Read

# mappings

Time (min:sec)

Peak

Mapper

mapped

(million)

1 thr

16 thrs

memory

 

mapped

(million)

1 thr

16 thrs

memory

Hobbes2

91.003%

5.71

03:09

00:41

0.8 GB

 

95.470%

438.33

79:35

28:46

1.2 GB

Hobbes

90.994%

5.84

04:26

01:06

1.4 GB

 

95.436%

453.43

90:11

57:01

29.1 GB

Masai

91.002%

5.68

05:19

−

0.9 GB

 

95.466%

446.98

131:11

−

1.3 GB

RazerS3

91.002%

5.69

13:28

12:35

1.4 GB

 

−

−

−

−

96.5 GB