Table 1 Summary statistics of CNVs called by four software packages
From: Evaluation of copy number variation detection for a SNP array platform
Software or platform | Mean size (bp) | Median size (bp) | Total amount | Success rate |
|---|---|---|---|---|
Birdsuite | 127,235 | 76,082 | 951 | 8.1% |
dChip | 178,920 | 83,144 | 639 | 5.4% |
GTC | 316,932 | 181,000 | 205 | 1.7% |
PennCNV-Affy | 152,634 | 87,813 | 564 | 4.8% |
CGH& | 19,040 | 11,502 | 11,759 | 100% |