Figure 5
From: Comparison of genotype clustering tools with rare variants
Pairwise tool agreement. Boxplots showing the Cohen’s κ coefficient (A) and the percent agreement (B) for all calls when GenCall is compared with the following three tools: GenoSNP (optimized), optiCall (without excluding markers failing Hardy-Weinberg) and zCall. Red lines are median and the numbers at the bottom of the plot represent the concordance means. The red dots represent the outliers according to the interquartile range.