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Table 1 Polymorphisms or unusual mutations ( p > 1%) weakly associated with PI resistance in HIV-1 protease from treated and naïve individuals according to the HIVdb

From: Natural polymorphisms and unusual mutations in HIV-1 protease with potential antiretroviral resistance: a bioinformatic analysis

Mutation

p(%)

PV (%)

Region (PV)

Association with drug resistance

Classification

W6R

2.34

8.20

C (0.98)

Found in indinavir-resistant PR [44]

UM

T12A/I

1.34/1.34

9.40

V (8.04)

T12A decreased in patients treated with PIs. [45]T12I appears in cell culture in the presence of SQV [46]

NP/NP

I13V

17.33

18.33

V (8.04)

Found in isolates from patients treated with NFV [47]

NP

I15V

8.28

9.27

V (8.04)

Associated with reduced virological response to RTV + SQV therapy [48]

NP

E35D

18.21

18.54

HV(26.05)

Associated with reduced in vivo virological responses to RTV/AMP [49]

NP

N37D/E

9.27/5.96

40.07

HV(26.05)

N37D appears together with N37E in patient treated with LPV + RTV [50]

NP/NP

R41K

19.00

19.00

SC(2.39)

Associated with reduced in vivo virological responses to RTV + APV in PIs experienced patients [49]

NP

R57K

17.88

18.38

*

Relatively frequent in patients failing treatment with RTV + SQV [51]

NP

L63A

3.48

84.77

HV(22.02)

L63A frequent polymorphism but significantly associated with the antiretroviral treatment [39, 52]

NP

H69Y

3.15

7.62

V(7.56)

Appears in viruses selected with LPV [53]

NP

K70E

3.31

9.11

V(7.56)

K70E appears in virus selected in cell culture with DRV [54]

NP

I72R

1.32

24.50

HV(27.48)

Associated with viral rebound during therapy with LPV + RTV [50]

UM

  1. p, prevalence; PV, phenotypic variation; C, conserved; SC, semi-conserved; V; variable; HV, highly variable; APV, amprenavir; ATV, atazanavir; DRV, darunavir; IDV, indinavir; RTV, ritonavir; SQV, saquinavir; PIs, protease inhibitors; NP, natural polymorphisms; UM, unusual mutations.
  2. *Values below the 15th percentile or above the 75th percentile were not considered.