Table 3 SNP-miRNA pairs predicted not to disturb the miRNA bindings by mrSNP on the SNPs - miRNA couples obtained from miRdSNP because both SNP alleles are predicted to bind the miRNAs
From: mrSNP: Software to detect SNP effects on microRNA binding
SNP | miRNA | Chr | Position | Alleles | Success | Explanation | |
|---|---|---|---|---|---|---|---|
rs11556953 | hsa-miR-133a | 1 | 159888369 | A | T | × | Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 2nd position. Binding difference is not reported because miRNA still have another target with 8 consecutive matches near the SNP location. |
rs13203 | hsa-miR-373 | 1 | 145442387 | A | C | × | Binds one of the sequences with 7 consecutive matches. SNP breaks the match on 4th position. Binding difference is not reported because miRNA still have another target with 7 consecutive matches near the SNP location. |
rs3218074 | hsa-miR-424 | 19 | 30315176 | A | G | × | miRNA is predicted to bind both of the sequences. SNP is on the 1st position, there are 7 consecutive matches in both. |
rs36076633 | hsa-miR-1 | 1 | 159888513 | - | G | × | miRNA is predicted to bind both of the sequences. SNP is on the 1st position, there are 7 consecutive matches in both. |
rs1059479 | hsa-miR-138 | 1 | 113243892 | A | C | × | miRNA is predicted to bind both of the sequences. SNP is on the 1st position, there are 8 consecutive matches in both. |
rs3218074 | hsa-miR-15b | 19 | 30315176 | A | G | × | miRNA is predicted to bind both of the sequences. SNP introduces a GU wobble on 1st position, there are 8 consecutive matches in both. |
rs3218074 | hsa-miR-15a | 19 | 30315176 | A | G | × | miRNA is predicted to bind both of the sequences. SNP introduces a GU wobble on 1st position, there are 8 consecutive matches in both. |
rs3218074 | hsa-miR-16 | 19 | 30315176 | A | G | × | miRNA is predicted to bind both of the sequences. SNP introduces a GU wobble on 1st position, there are 8 consecutive matches in both. |