Table 1 Call rates and concordance rates for various datasets of different sizes (values are in percentages)
DataSet | # of Samples | Overall call rate | Homo call rate | Hetero call rate | Overall concord rate | Homo concord rate | Hetero concord rate |
|---|---|---|---|---|---|---|---|
A | 270 | 99.56 | 99.80 | 98.97 | 99.59 | 99.58 | 99.63 |
A | 270 | 100.0 | 100.0 | 100.0 | 99.50 | 99.51 | 99.46 |
B | 50 | 99.56 | 99.82 | 98.82 | 99.58 | 99.58 | 99.57 |
B | 50 | 100.0 | 100.0 | 100.0 | 99.47 | 99.52 | 99.35 |
C | 50 | 99.73 | 99.90 | 99.49 | 99.58 | 99.61 | 99.27 |
C | 50 | 100.0 | 100.0 | 100.0 | 99.52 | 99.58 | 99.35 |
D | 50 | 99.53 | 99.79 | 98.89 | 99.44 | 99.41 | 99.51 |
D | 50 | 100.0 | 100.0 | 100.0 | 99.33 | 99.34 | 99.31 |
E | 30 | 99.61 | 99.84 | 98.92 | 99.35 | 99.43 | 99.13 |
F | 30 | 99.71 | 99.89 | 99.24 | 99.43 | 99.21 | 99.51 |
G | 30 | 99.56 | 99.79 | 98.92 | 99.25 | 99.29 | 99.13 |
H | 135 | 99.51 | 99.76 | 98.94 | 99.77 | 99.83 | 99.61 |
H | 135 | 100.0 | 100.0 | 100.0 | 99.70 | 99.77 | 99.52 |
I | 50 | 100.0 | 100.0 | 100.0 | 99.65 | 99.71 | 99.51 |
J | 50 | 100.0 | 100.0 | 100.0 | 99.61 | 99.68 | 99.43 |
K | 50 | 100.0 | 100.0 | 100.0 | 99.76 | 99.82 | 99.61 |
L | 30 | 100.0 | 100.0 | 100.0 | 99.65 | 99.71 | 99.50 |
M | 30 | 100.0 | 100.0 | 100.0 | 99.64 | 99.66 | 99.60 |
N | 30 | 100.0 | 100.0 | 100.0 | 99.56 | 99.61 | 99.41 |
O | 20 | 100.0 | 100.0 | 100.0 | 99.49 | 99.50 | 99.44 |