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Table 2 Percentages of heterozygous calls on chromosomes with copy number loss and genotyping errors (CN = copy number)

From: BCRgt: a Bayesian cluster regression-based genotyping algorithm for the samples with copy number alterations

Method

Heterozygous calls at CN loss region

Genotyping error at CN loss region

Genotyping error at CN normal region

BCRgt

0.23%

0.03%

0.16%

BRLMM

4.11%

1.83%

0.28%