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Figure 4 | BMC Bioinformatics

Figure 4

From: spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

Figure 4

Example of transcript switching. Screen shot from the UCSC genome browser showing the transcript switch found in the SQSTM1 gene. The two top tracks show transcripts generated by the generateGTF() function for WT (top) and Usp49KD (bottom). Darker transcripts are expressed at higher levels. The two bottom tracks indicate RefSeq genes (top) and protein domains identified via Pfam [21] respectively (bottom).

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BMC Bioinformatics

ISSN: 1471-2105

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