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Table 1 Summary of count distribution across exons

From: Reducing bias in RNA sequencing data: a novel approach to compute counts

   

Exons (%)

Data set

Group

counts (%)

maxcounts

totcounts

RPKM

Jiang

Cell

50

6

5

5

  

90

34

31

31

 

Nucleus

50

7

5

7

  

90

42

37

39

Griffith

MIP101

50

9

4

8

  

90

44

33

40

 

MIP5FU

50

9

4

8

  

90

45

33

40

MAQC2

Brain

50

6

3

5

  

90

38

26

33

 

UHR

50

5

3

4

  

90

37

27

33

  1. Summary of the distributions of maxcounts, totcounts and RPKM-corrected totcounts (RPKM) across exons in Jiang's, Griffith's and MAQC2 data sets. Table reports the percentage of exons accounting for 50% and 90% of total counts/RPKMs (average values across libraries belonging to the same condition).
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BMC Bioinformatics

ISSN: 1471-2105

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